diff options
Diffstat (limited to 'vendor/petgraph/src/graph6')
| -rw-r--r-- | vendor/petgraph/src/graph6/graph6_decoder.rs | 200 | ||||
| -rw-r--r-- | vendor/petgraph/src/graph6/graph6_encoder.rs | 154 | ||||
| -rw-r--r-- | vendor/petgraph/src/graph6/mod.rs | 7 |
3 files changed, 0 insertions, 361 deletions
diff --git a/vendor/petgraph/src/graph6/graph6_decoder.rs b/vendor/petgraph/src/graph6/graph6_decoder.rs deleted file mode 100644 index c0d6ecfa..00000000 --- a/vendor/petgraph/src/graph6/graph6_decoder.rs +++ /dev/null @@ -1,200 +0,0 @@ -//! [graph6 format](https://users.cecs.anu.edu.au/~bdm/data/formats.txt) decoder for undirected graphs. - -use crate::{csr::Csr, graph::IndexType, Graph, Undirected}; - -#[cfg(feature = "graphmap")] -use crate::graphmap::GraphMap; - -#[cfg(feature = "graphmap")] -use std::hash::BuildHasher; - -#[cfg(feature = "matrix_graph")] -use crate::matrix_graph::{MatrixGraph, Nullable}; - -#[cfg(feature = "stable_graph")] -use crate::stable_graph::{StableGraph, StableUnGraph}; - -const N: usize = 63; - -/// A graph that can be converted from graph6 format string. -pub trait FromGraph6 { - fn from_graph6_string(graph6_string: String) -> Self; -} - -/// Converts a graph6 format string into data can be used to construct an undirected graph. -/// Returns a tuple containing the graph order and its edges. -pub fn from_graph6_representation<Ix>(graph6_representation: String) -> (usize, Vec<(Ix, Ix)>) -where - Ix: IndexType, -{ - let (order_bytes, adj_matrix_bytes) = - get_order_bytes_and_adj_matrix_bytes(graph6_representation); - - let order_bits = bytes_vector_to_bits_vector(order_bytes); - let adj_matrix_bits = bytes_vector_to_bits_vector(adj_matrix_bytes); - - let graph_order = get_bits_as_decimal(order_bits); - let edges = get_edges(graph_order, adj_matrix_bits); - - (graph_order, edges) -} - -// Converts a graph6 format string into a vector of bytes, converted from ASCII characters, -// split into two parts, the first representing the graph order, and the second its adjacency matrix. -fn get_order_bytes_and_adj_matrix_bytes(graph6_representation: String) -> (Vec<usize>, Vec<usize>) { - let bytes: Vec<usize> = graph6_representation - .chars() - .map(|c| (c as usize) - N) - .collect(); - - let mut order_bytes = vec![]; - let mut adj_matrix_bytes = vec![]; - - let first_byte = *bytes.first().unwrap(); - if first_byte == N { - order_bytes.extend_from_slice(&bytes[1..=3]); - adj_matrix_bytes.extend_from_slice(&bytes[4..]); - } else { - order_bytes.push(first_byte); - adj_matrix_bytes.extend_from_slice(&bytes[1..]); - }; - - (order_bytes, adj_matrix_bytes) -} - -// Converts a bytes vector into a bits vector. -fn bytes_vector_to_bits_vector(bytes: Vec<usize>) -> Vec<u8> { - bytes - .iter() - .flat_map(|&byte| get_number_as_bits(byte, 6)) - .collect() -} - -// Get binary representation of `n` as a vector of bits with `bits_length` length. -fn get_number_as_bits(n: usize, bits_length: usize) -> Vec<u8> { - let mut bits = Vec::new(); - for i in (0..bits_length).rev() { - bits.push(((n >> i) & 1) as u8); - } - bits -} - -// Convert a bits vector into its decimal representation. -fn get_bits_as_decimal(bits: Vec<u8>) -> usize { - let bits_str = bits - .iter() - .map(|bit| bit.to_string()) - .collect::<Vec<String>>() - .join(""); - - usize::from_str_radix(&bits_str, 2).unwrap() -} - -// Get graph edges from its order and bits vector representation of its adjacency matrix. -fn get_edges<Ix>(order: usize, adj_matrix_bits: Vec<u8>) -> Vec<(Ix, Ix)> -where - Ix: IndexType, -{ - let mut edges = vec![]; - - let mut i = 0; - for col in 1..order { - for lin in 0..col { - let is_adjacent = adj_matrix_bits[i] == 1; - - if is_adjacent { - edges.push((Ix::new(lin), Ix::new(col))); - }; - - i += 1; - } - } - - edges -} - -impl<Ix: IndexType> FromGraph6 for Graph<(), (), Undirected, Ix> { - fn from_graph6_string(graph6_string: String) -> Self { - let (order, edges): (usize, Vec<(Ix, Ix)>) = from_graph6_representation(graph6_string); - - let mut graph: Graph<(), (), Undirected, Ix> = Graph::with_capacity(order, edges.len()); - for _ in 0..order { - graph.add_node(()); - } - graph.extend_with_edges(edges); - - graph - } -} - -#[cfg(feature = "stable_graph")] -impl<Ix: IndexType> FromGraph6 for StableGraph<(), (), Undirected, Ix> { - fn from_graph6_string(graph6_string: String) -> Self { - let (order, edges): (usize, Vec<(Ix, Ix)>) = from_graph6_representation(graph6_string); - - let mut graph: StableGraph<(), (), Undirected, Ix> = - StableUnGraph::with_capacity(order, edges.len()); - for _ in 0..order { - graph.add_node(()); - } - graph.extend_with_edges(edges); - - graph - } -} - -#[cfg(feature = "graphmap")] -impl<Ix: IndexType, S: BuildHasher + Default> FromGraph6 for GraphMap<Ix, (), Undirected, S> { - fn from_graph6_string(graph6_string: String) -> Self { - let (order, edges): (usize, Vec<(Ix, Ix)>) = from_graph6_representation(graph6_string); - - let mut graph: GraphMap<Ix, (), Undirected, S> = - GraphMap::with_capacity(order, edges.len()); - for i in 0..order { - graph.add_node(Ix::new(i)); - } - for (a, b) in edges { - graph.add_edge(a, b, ()); - } - - graph - } -} - -#[cfg(feature = "matrix_graph")] -impl<Null, Ix> FromGraph6 for MatrixGraph<(), (), Undirected, Null, Ix> -where - Null: Nullable<Wrapped = ()>, - Ix: IndexType, -{ - fn from_graph6_string(graph6_string: String) -> Self { - let (order, edges): (usize, Vec<(Ix, Ix)>) = from_graph6_representation(graph6_string); - - let mut graph: MatrixGraph<(), (), Undirected, Null, Ix> = - MatrixGraph::with_capacity(order); - for _ in 0..order { - graph.add_node(()); - } - graph.extend_with_edges(edges.iter()); - - graph - } -} - -impl<Ix: IndexType> FromGraph6 for Csr<(), (), Undirected, Ix> { - fn from_graph6_string(graph6_string: String) -> Self { - let (order, edges): (usize, Vec<(Ix, Ix)>) = from_graph6_representation(graph6_string); - - let mut graph: Csr<(), (), Undirected, Ix> = Csr::new(); - let mut nodes = Vec::new(); - for _ in 0..order { - let i = graph.add_node(()); - nodes.push(i); - } - for (a, b) in edges { - graph.add_edge(a, b, ()); - } - - graph - } -} diff --git a/vendor/petgraph/src/graph6/graph6_encoder.rs b/vendor/petgraph/src/graph6/graph6_encoder.rs deleted file mode 100644 index 41ba530a..00000000 --- a/vendor/petgraph/src/graph6/graph6_encoder.rs +++ /dev/null @@ -1,154 +0,0 @@ -//! [graph6 format](https://users.cecs.anu.edu.au/~bdm/data/formats.txt) encoder for undirected graphs. - -use crate::{ - csr::Csr, - graph::IndexType, - visit::{GetAdjacencyMatrix, IntoNodeIdentifiers}, - Graph, Undirected, -}; - -#[cfg(feature = "graphmap")] -use crate::graphmap::{GraphMap, NodeTrait}; - -#[cfg(feature = "graphmap")] -use std::hash::BuildHasher; - -#[cfg(feature = "matrix_graph")] -use crate::matrix_graph::{MatrixGraph, Nullable}; - -#[cfg(feature = "stable_graph")] -use crate::stable_graph::StableGraph; - -const N: usize = 63; - -/// A graph that can be converted to graph6 format string. -pub trait ToGraph6 { - fn graph6_string(&self) -> String; -} - -/// Converts a graph that implements GetAdjacencyMatrix and IntoNodeIdentifers -/// into a graph6 format string. -pub fn get_graph6_representation<G>(graph: G) -> String -where - G: GetAdjacencyMatrix + IntoNodeIdentifiers, -{ - let (graph_order, mut upper_diagonal_as_bits) = get_adj_matrix_upper_diagonal_as_bits(graph); - let mut graph_order_as_bits = get_graph_order_as_bits(graph_order); - - let mut graph_as_bits = vec![]; - graph_as_bits.append(&mut graph_order_as_bits); - graph_as_bits.append(&mut upper_diagonal_as_bits); - - bits_to_ascii(graph_as_bits) -} - -// Traverse graph nodes and construct the upper diagonal of its adjacency matrix as a vector of bits. -// Returns a tuple containing: -// - `n`: graph order (number of nodes in graph) -// - `bits`: a vector of 0s and 1s encoding the upper diagonal of the graphs adjacency matrix. -fn get_adj_matrix_upper_diagonal_as_bits<G>(graph: G) -> (usize, Vec<usize>) -where - G: GetAdjacencyMatrix + IntoNodeIdentifiers, -{ - let node_ids_iter = graph.node_identifiers(); - let mut node_ids_vec = vec![]; - - let adj_matrix = graph.adjacency_matrix(); - let mut bits = vec![]; - let mut n = 0; - for node_id in node_ids_iter { - node_ids_vec.push(node_id); - - for i in 1..=n { - let is_adjacent: bool = - graph.is_adjacent(&adj_matrix, node_ids_vec[i - 1], node_ids_vec[n]); - bits.push(if is_adjacent { 1 } else { 0 }); - } - - n += 1; - } - - (n, bits) -} - -// Converts graph order to a bits vector. -fn get_graph_order_as_bits(order: usize) -> Vec<usize> { - let to_convert_to_bits = if order < N { - vec![(order, 6)] - } else if order <= 258047 { - vec![(N, 6), (order, 18)] - } else { - panic!("Graph order not supported.") - }; - - to_convert_to_bits - .iter() - .flat_map(|&(n, n_of_bits)| get_number_as_bits(n, n_of_bits)) - .collect() -} - -// Get binary representation of `n` as a vector of bits with `bits_length` length. -fn get_number_as_bits(n: usize, bits_length: usize) -> Vec<usize> { - let mut bits = Vec::new(); - for i in (0..bits_length).rev() { - bits.push((n >> i) & 1); - } - bits -} - -// Convert a vector of bits to a String using ASCII encoding. -// Each 6 bits will be converted to a single ASCII character. -fn bits_to_ascii(mut bits: Vec<usize>) -> String { - while bits.len() % 6 != 0 { - bits.push(0); - } - - let bits_strs = bits.iter().map(|bit| bit.to_string()).collect::<Vec<_>>(); - - let bytes = bits_strs - .chunks(6) - .map(|bits_chunk| bits_chunk.join("")) - .map(|bits_str| usize::from_str_radix(&bits_str, 2)); - - bytes - .map(|byte| char::from((N + byte.unwrap()) as u8)) - .collect() -} - -impl<N, E, Ix: IndexType> ToGraph6 for Graph<N, E, Undirected, Ix> { - fn graph6_string(&self) -> String { - get_graph6_representation(self) - } -} - -#[cfg(feature = "stable_graph")] -impl<N, E, Ix: IndexType> ToGraph6 for StableGraph<N, E, Undirected, Ix> { - fn graph6_string(&self) -> String { - get_graph6_representation(self) - } -} - -#[cfg(feature = "graphmap")] -impl<N: NodeTrait, E, S: BuildHasher> ToGraph6 for GraphMap<N, E, Undirected, S> { - fn graph6_string(&self) -> String { - get_graph6_representation(self) - } -} - -#[cfg(feature = "matrix_graph")] -impl<N, E, Null, Ix> ToGraph6 for MatrixGraph<N, E, Undirected, Null, Ix> -where - N: NodeTrait, - Null: Nullable<Wrapped = E>, - Ix: IndexType, -{ - fn graph6_string(&self) -> String { - get_graph6_representation(self) - } -} - -impl<N, E, Ix: IndexType> ToGraph6 for Csr<N, E, Undirected, Ix> { - fn graph6_string(&self) -> String { - get_graph6_representation(self) - } -} diff --git a/vendor/petgraph/src/graph6/mod.rs b/vendor/petgraph/src/graph6/mod.rs deleted file mode 100644 index 0d16f0c7..00000000 --- a/vendor/petgraph/src/graph6/mod.rs +++ /dev/null @@ -1,7 +0,0 @@ -//! Traits related to [graph6 format](https://users.cecs.anu.edu.au/~bdm/data/formats.txt) for undirected graphs. - -pub use self::graph6_decoder::*; -pub use self::graph6_encoder::*; - -mod graph6_decoder; -mod graph6_encoder; |
